Infectious Disease Specialty

Infectious Disease Billing Services, Front Desk and Growth in One Plan

Consults, hospital visits, infusions, long-acting injectables and PrEP, plus benefit checks, prior authorization, patient marketing and a claims portal for infectious disease practices.

  • Works inside your current EHR
  • US practice time zone, every shift
  • Weekly KPI reporting, or on your schedule
Infectious disease billing dashboard showing consult visits, infusion claims, prior authorizations, PrEP visits and denials

Quick answer

Infectious disease billing services manage the claims an ID practice creates: hospital and clinic visits, infusions and injections, drug lines, OPAT oversight and PrEP services. They also check drug benefits and prior authorization before each dose. RCM Finder adds front-desk assistants, marketing and a claims portal.

Disclaimer: This page is educational and is not legal, coding or compliance advice. Medicare manuals, local coverage determinations, fee schedule rules and payer policies change often and vary by contractor, state and plan. Verify every code, limit and rule against current CMS documents, your Medicare contractor's guidance, your payer contracts and the current CPT and HCPCS code sets before billing.

Why infectious disease billing is different

Infectious disease billing is different because one physician can bill a hospital visit, a clinic visit, an infusion, an injection and prevention counseling in the same week, each under its own rules. Medicare also does not pay the standard consultation codes.

In the CMS Evaluation and Management Services booklet (MLN006764, May 2026), Medicare does not recognize the inpatient consultation codes 99252 to 99255 or the office consultation codes 99242 to 99245 for Part B payment. You report the visit code that fits the service instead. Other payers set their own consult policy.

  • Many settings. Hospital, clinic, infusion suite and home each change the code family.
  • Drugs on the claim. Infusions and injections bring administration codes, drug codes and, often, inventory the practice pays for first.
  • Judgment-heavy visits. Documentation of your thinking sets the visit level.
  • Prevention and treatment. PrEP is a covered preventive benefit with its own limits.

If your work is mostly cancer infusion or allergy injections, see oncology billing or allergy and immunology billing. For hospital rounding, see internal medicine billing.

Medicare has covered HIV pre-exposure prophylaxis (PrEP) under Part B since September 30, 2024, per CMS Change Request 13843.

The four pillars, built for an infectious disease practice

An infectious disease practice needs referrals, a front desk that checks drug benefits early, billing that understands drug lines, and software that shows where each claim sits.

Revenue leaks at handoffs, such as an infusion started before the benefit check. We run all four pillars from one set of payer rules.

Pillar 1 · Healthcare Marketing

Healthcare Marketing for infectious disease practices

Our healthcare digital marketing helps referrers and patients find you through local search pages, referral pages and reputation work.

  • Local pages for PrEP and HIV care
  • A referral page for hospitalists
  • Review replies that never confirm a patient
  • Tracking reviewed against HHS guidance
Explore Healthcare Marketing
Pillar 2 · Virtual Medical Assistants

Virtual Medical Assistants for infectious disease front desks

Our Virtual Medical Assistants work inside your existing EHR (for example PrognoCIS, eClinicalWorks or athenahealth). They check drug benefits and chase prior authorizations before the dose.

  • Medical or pharmacy benefit checks
  • Prior authorization requests and follow-up
  • Reminders for injection visits and labs
  • US practice time zone, every shift
Explore Virtual Medical Assistants
Pillar 3 · End-to-End RCM

End-to-End RCM for consults, infusions and PrEP

Our end-to-end revenue cycle management covers coding support, claim scrubbing, denial management and A/R follow-up for visit, drug and PrEP lines.

  • Visit codes matched to payer consult rules
  • Administration, drug and discard lines checked together
  • PrEP claims checked against limits
  • Appeals worked with the clinical note
Explore End-to-End RCM
Pillar 4 · Practice Management System

Practice Management System for drug-heavy claims

Our Practice Management System tracks each claim by stage and checks data completeness before submission. Appointment booking is in early access. Credentialing and in-portal real-time eligibility are coming next.

  • Claim tracking by stage
  • Specialty-aware billing logic per claim
  • Underpayment detection
  • Role-based permissions and audit log
Explore Practice Management System

Find where your infectious disease claims leak

We review recent visit, infusion, injection and PrEP claims with their denials, then show what to fix first.

Get a Free Practice Audit

Infectious disease service families: codes, rules and denial triggers

Each service family has its own payment rule. Codes are described in our own words, because the AMA owns CPT descriptors. Check the current code set and your Medicare contractor.

Infectious disease service families: code examples, billing rules and typical denial triggers
Service familyCode examples (our wording)Billing rule to knowTypical denial trigger
Office or outpatient visits99202 to 99205 (new), 99211 to 99215 (established), G2211 add-onMedicare does not pay CPT consult codes; bill the visit code. G2211 applies to office and home codesConsult code sent to Medicare
Hospital inpatient or observation99221 to 99223 (initial), 99231 to 99233 (subsequent), 99238 and 99239 (discharge)One hospital visit code per patient per date; no discharge code under 8 hoursTwo visit codes on one date
Prolonged servicesG2212 (office, with 99205, 99215 or 99483), G0316 (inpatient or observation)At least 15 extra minutes; not with ED or critical careTotal time not documented
Visits shared with an NP or PAHospital visit codes with modifier FSThe practitioner doing the substantive part bills; not allowed in the officeMissing FS
Drug administration96365 and 96366 (IV infusion), 96372 (shot), 96374 (IV push)One initial code; 99211 not paid with infusions; modifier 25 on a separate E/MSecond initial code; E/M without modifier 25
Drug supplyJ-codes with units; JW or JZ for single-dose containersPart B pays most separately payable drugs at ASP plus 6%Missing JW or JZ
HIV PrEP servicesG0011 and G0013 (counseling), G0012 (injection), J0739 (cabotegravir 1 mg)Up to 8 counseling visits and 8 HIV screens per 12 months; no cost sharingOver the limit; no allowed diagnosis

Source: CMS MLN006764 (May 2026); CMS Claims Processing Manual Chapter 12 section 30.5; CMS Change Request 13843 and NCD 210.15; CMS JW/JZ instructions (R12067CP); CMS Part B ASP page (modified August 2026); AAPC code pages for 96365, 96372 and 96374. Other Medicare contractors and payers may differ.

Consults, inpatient visits and time

The CMS booklet allows one hospital inpatient or observation code per patient per calendar date. Discharge codes 99238 and 99239 apply when discharge falls on a different date than admission, not for stays under 8 hours.

For long visits, the booklet describes G2212 for office care and G0316 for inpatient or observation care once total time passes the top visit's time by 15 minutes. Its table sets thresholds such as 90 minutes for 99223 and 65 minutes for 99233. When an NP or PA shares a facility visit, modifier FS is required.

Infusions, injections and drug lines

Chapter 12 of the Medicare Claims Processing Manual (section 30.5) says to report one initial administration code, the one that best describes the main reason for the visit, unless protocol needs two IV sites. The extra-hour code applies only when the infusion runs more than 30 minutes past a full hour.

The drug itself is a second line. Part B pays most separately payable drugs at average sales price plus 6 percent, per the CMS ASP page. For single-dose containers, CMS instructions require JW on a line for discarded units, or JZ when none was discarded, for dates of service from July 1, 2023. Claims without them can be audited.

Labs run in your own office

If your practice runs even one test in-house, CMS's CLIA guidance says you generally need a certificate that matches the test complexity. Our laboratory billing guide covers lab claims.

OPAT and home infusion: where physician billing ends and supplier billing begins

Outpatient parenteral antimicrobial therapy (OPAT) splits billing across parties. The ID physician bills visits and oversight. A home infusion supplier bills the drug, nursing and equipment.

The 2018 IDSA guideline coverage in Healio says an ID physician, nurse or pharmacist should check every OPAT order before therapy starts, and patients should be monitored regularly. That oversight reaches your claims only through the visits you document.

Diagram of an OPAT episode from discharge order and ID plan to home infusion supplier, lab monitoring and billed visits
Who does what in an OPAT episode, and where each claim line comes from.

What Original Medicare covers at home

The Medicare home infusion therapy benefit began January 1, 2021, per CMS. It pays qualified suppliers for nursing, training and monitoring for certain drugs given through a pump that is durable medical equipment. CMS's CY 2026 rate file lists G0068 for home administration of anti-infective and other infusion drugs.

The drug list is narrow. In the External Infusion Pumps LCD (L33794), the antifungal and antiviral indication names acyclovir, foscarnet, amphotericin B and ganciclovir, and its general criteria include a prolonged infusion of at least 8 hours (revision effective July 1, 2026). This is a DME contractor policy. Other contractors and Medicare Advantage plans may differ.

Physician plan of care

Under 42 CFR 486.520, a home infusion supplier requires a physician-established plan of care with the type, amount and duration of services, reviewed periodically. Track the signature and review date, because the supplier's claim can stall without them. Our home infusion coding post covers home infusion billing in general.

Prior authorization for infusion drugs and long-acting injectables

Check the drug benefit before you schedule the first dose. The first question is whether the payer treats the drug as a medical or pharmacy benefit, because that sets who buys it and who carries the loss if it is denied.

A June 2022 long-acting antiretroviral considerations document says most insurers cover Cabenuva as a medical benefit, and the payer may decide whether the clinic buys and bills or receives the drug from a specialty pharmacy. In buy-and-bill, the provider carries the drug cost. It is dated, so verify current terms. California's ADAP list shows J0741 for Cabenuva.

Diagram of a long-acting injectable path from benefit check and prior authorization to injection visit and claim follow-up
The checks that should finish before an injectable reaches the clinic.
Pre-visit and prior authorization checklist for infusion drugs and long-acting injectables
CheckWhy it mattersWhat our VMA records
Medical or pharmacy benefitSets buy-and-bill or specialty pharmacy supply (HIVMA, 2022)Benefit type and supply route
Prior authorization and reauthorizationPlans may need approval for the drug. CMS-0057-F decision windows (72 hours expedited, 7 calendar days standard) do not apply to drug decisions, so ask each plan for its drug timelineReference number, units, end date
Original Medicare or Medicare AdvantagePlan type changes who approvesPlan type each visit
Diagnosis fit for PrEP servicesPrEP codes need an allowed diagnosis, such as Z29.81 (CMS CR 13843)Diagnosis and 12-month visit count
Single-dose container planJW or JZ is required on applicable claims (CMS)Vial size, dose, discarded amount
Home infusion drug and supplierDrug must fit the LCD list; physician plan of care needed (LCD; 42 CFR 486.520)Supplier, pump, plan-of-care date
Appeal readinessKFF found 80.7% of appealed Medicare Advantage denials fully or partly overturned (2024 data)Denial reason, due date, clinical note

Source: HIVMA long-acting antiretroviral considerations (June 2022); CMS-0057-F fact sheet; CMS Change Request 13843; CMS JW/JZ instructions; External Infusion Pumps LCD L33794; 42 CFR 486.520; KFF (January 2026). The KFF figures cover all Medicare Advantage services, not infusion alone.

On timing, the CMS-0057-F fact sheet sets decision windows of 72 hours (expedited) and 7 calendar days (standard) for Medicare Advantage, Medicaid and CHIP plans. It also says its policies, including the denial-reason provision, do not apply to prior authorization decisions for drugs, so ask each plan how long an infusion or injectable drug decision takes. In KFF’s analysis of 2024 data (January 2026), Medicare Advantage insurers denied 7.7% of 52.8 million determinations and 11.5% of denials were appealed. KFF says it cannot split these by service type. See our prior authorization guide and insurance verification guide.

See what denied infusions and injectables cost you

Enter your claim volume and denial rate to estimate what an infectious disease practice is losing.

Open the Revenue Calculator

HIV and PrEP services: what the preventive benefit pays

Medicare covers PrEP drugs and related services under Part B with no deductible or coinsurance, within set limits. CMS NCD 210.15 guidance makes the effective date September 30, 2024.

Per CMS, covered services include up to eight counseling visits and eight HIV screening tests every 12 months, plus one hepatitis B screening. G0011 reports counseling by a physician or qualified professional (15 to 30 minutes) and G0013 by clinical staff. G0012 reports a PrEP injection, J0739 cabotegravir 1 mg, and J0750 and J0751 the oral drugs. The transmittal says claims need an allowed diagnosis, with Z29.81 as the primary diagnosis for screening edits.

The USPSTF gave PrEP a Grade A recommendation (clinician summary dated August 22, 2023) for people at increased risk of HIV. For private plans, KFF reports that the Supreme Court upheld the ACA no-cost-sharing rule for USPSTF services in June 2025, and that changes could still come. Verify each plan's terms.

  • Count visits. Track the eight-visit and eight-screen limits by patient.
  • Separate the lines. Counseling, screening, the drug and the injection are different lines.
  • Protect privacy. HHS explains the minimum necessary rule, which does not apply to disclosures for treatment.

Stewardship, cognitive work and documentation that supports the visit level

Most ID work is thinking, so your note has to show it. The visit level rests on medical decision making (MDM) or total time.

The AMA's 2023 E/M guidelines say an MDM level needs two of three elements. High risk includes drug therapy requiring intensive monitoring for toxicity, and moderate includes prescription drug management. The AMA says that monitoring must target adverse effects, rely on a lab, physiologic test or imaging, and be considered during the encounter. Long-term means at least quarterly. Whether a given antimicrobial meets that test is a coding call for your team and payer.

For data, the AMA counts outside notes reviewed, each unique test reviewed or ordered, an independent historian, and a direct discussion of management with an outside clinician. Sending chart notes is not discussion.

  • Hospital stewardship. 42 CFR 482.42 requires hospitals to run an antibiotic stewardship program with a qualified leader. That is a facility duty.
  • Clinic stewardship. The CDC lists seven core elements of outpatient antibiotic stewardship. They are program elements, not billing codes.
  • Time. When a visit runs long, record total time and activities.

Modifier choices also decide payment. Our posts on modifier 25 versus 59 and clean claims explain how same-day lines survive review.

In-house team, billing-only vendor or four-pillar partner?

Stay in-house if your staff track drug benefits and PrEP limits well. Use a billing-only vendor if claims are your only gap. Choose a combined partner when problems begin at the front desk and end as denials.

Decision table: which model fits an infectious disease practice?
JobIn-house teamBilling-only vendorFour-pillar partner (RCM Finder)
Consult and E/M codingBiller reads each payer's consult ruleCoding support after the visitCoding support with payer rules checked first
Drug benefit and prior authorizationFront desk, between callsOften left to the practiceVMA checks and follows up before the dose
Infusion and injection claim linesBiller checks codes, units, JW and JZScrubs claims it receivesScrubbing with data-completeness checks in our portal
PrEP visit and screening limitsManual trackingUsually reviews denials onlyVisit counts kept with the patient record
OPAT and home infusion coordinationNurse or physician follows upNot coveredVMA tracks plan-of-care paperwork
Referral growthSeparate marketing vendorNot coveredHealthcare marketing under the same plan
ReportingSpreadsheetsMonthly reportsDashboards and weekly KPI reporting

How it works

We start with a free audit and change nothing until you see the findings. We build our billing pipeline around how claims actually move through a practice: registration, charge entry, submission, payment and follow-up. For infectious disease, we add the checks on this page.

  1. 1

    Free practice audit

    We review recent visit, infusion, injection and PrEP claims, denials and eligibility notes.

  2. 2

    Business Associate Agreement and access

    We put a Business Associate Agreement in place before accessing patient data. Then we work inside your existing EHR with role-based access.

  3. 3

    Payer-rule setup

    We map your payers' consult, drug benefit and prior authorization rules, and your supply route for each drug.

  4. 4

    Daily work

    VMAs check benefits and send requests. Our billing team scrubs claims, works denials and follows A/R.

  5. 5

    Weekly review

    You see KPI reporting each week, with open denials and authorizations listed by owner.

Talk to us about your infectious disease practice

Tell us where you see patients and which drugs you give. We will tell you honestly whether we fit.

Call +1 (302) 556-2288

Compliance: what to ask any infectious disease billing company

Any vendor that handles patient data for billing is a HIPAA business associate. Get a Business Associate Agreement before access, and ask how access is limited and logged.

HHS guidance lists claims processing, billing and practice management among business associate functions. A business associate must have a Business Associate Agreement with its own subcontractors before sharing patient data. On your website, HHS online tracking guidance says trackers on scheduling pages may access protected health information, and a cookie banner is not a valid authorization.

  1. Will you and your subcontractors sign a Business Associate Agreement before any access?
  2. How do you limit access, and can we see the audit log?
  3. What coding credentials and infectious disease experience do your coders have?
  4. How do you handle JW and JZ units and authorization end dates?
  5. How do you keep marketing tools away from patient information?
  6. Which state rules on HIV-related information should our attorney review?

We use role-based access, audit logging and encrypted (HTTPS) connections, and we put a Business Associate Agreement in place before accessing patient data. For your own side, use our HIPAA compliance checklist for medical practices.

Who this is for, and who it is not for

We would rather tell you now than after you sign. Here is where we fit and where we do not.

A good fit if you are

  • Infectious disease groups that see hospital consults and clinic patients and want one team across both
  • Practices that give infusions, injections or long-acting HIV drugs and buy the drug first
  • Groups that supervise OPAT or work with home infusion suppliers
  • HIV and PrEP clinics that need preventive claims tracked within coverage limits
  • Billing companies serving infectious disease clients that want a shared claims portal

Probably not a fit if you are

  • Hospital-employed physicians whose employer controls all billing
  • Practices that want claims billed without changing any front-desk step
  • Practices looking for promised collection rates; we report measured KPIs
  • Groups that need a credentialing module or in-portal real-time eligibility today; both are coming next

Expert recommendations from our operations team

What we would do first if we were running your practice's revenue cycle tomorrow.

  1. 01

    Check the drug benefit first

    Medical or pharmacy benefit decides who buys the drug. We confirm it before the first dose is scheduled.

  2. 02

    Match the consult code to the payer

    Medicare wants the visit code. Other payers differ. We record each payer's rule once and apply it at coding.

  3. 03

    Bill drug lines as a set

    Administration, drug, units and JW or JZ should be reviewed together. We scrub them as a set.

  4. 04

    Track PrEP limits by patient

    The eight-visit and eight-screen limits run per 12 months. We keep the count where billing can see it.

  5. 05

    Keep OPAT paperwork with the chart

    Plan-of-care dates, lab orders and supplier names belong in one place. We keep them tied to the episode.

  6. 06

    Document the thinking

    Record outside notes reviewed, tests ordered, who gave history and total time. Those entries support the level you bill.

  7. 07

    Appeal with the note attached

    In KFF's 2024 data, most appealed Medicare Advantage denials were overturned, so we attach the clinical note and work the deadline.

Frequently asked questions

What do infectious disease billing services include?

They cover coding support, claim scrubbing, submission, denial management and A/R follow-up for visits, infusions, injections and PrEP services. A good partner also checks drug benefits and prior authorization before the dose. We add front-desk assistants, referral marketing and a claims portal, so one team handles the work from the first call to payment.

Does Medicare pay consultation codes for infectious disease?

No. CMS's May 2026 E/M booklet says Medicare does not recognize the office consultation codes 99242 to 99245 or the inpatient consultation codes 99252 to 99255 for Part B payment. You bill the visit code that fits the service. Other payers set their own policy, and some may still accept consultation codes, so check each contract before choosing a code.

Can I bill a visit and an infusion on the same day?

Sometimes. CMS's Claims Processing Manual says a significant, separately identifiable E/M service takes modifier 25 when billed with an injection or infusion, and 99211 is not payable with infusion codes. The note should show a separate evaluation, not only the pre-infusion check. Payer rules vary, so confirm them with each plan.

How does Medicare cover PrEP?

Since September 30, 2024, Part B has covered PrEP drugs and related services under NCD 210.15, with no deductible or coinsurance. CMS allows up to eight counseling visits and eight HIV screening tests every 12 months, plus one hepatitis B screening. Claims need an allowed diagnosis, such as Z29.81 for screening edits.

Who bills for home IV antibiotics?

Usually two parties bill. The infectious disease physician bills visits and oversight. A home infusion supplier bills the drug, nursing and equipment, where covered. Original Medicare covers only certain pump drugs, and Part D covers drugs without supplies or nursing. Check each patient's plan, keep the physician plan of care current, and tell patients early about possible out-of-pocket costs.

What do I need before a long-acting HIV injection?

Confirm whether the payer treats the drug as a medical or pharmacy benefit, then confirm who supplies it. Get any prior authorization, record approved units and dates, and plan for JW or JZ if a single-dose container applies. Then schedule the injection visit. Terms differ by payer and change often, so check them each time.

No cost, no commitment

Get your free practice audit

Tell us about your practice. A member of our operations team replies within one business day.

  • A review of your recent claims, denials and A/R aging
  • Where your front desk and prior authorizations slow payment
  • A prioritized fix list you keep, whether or not you hire us

Pricing is quoted after the audit, based on your volume and the services you choose. Prefer to talk? Call +1 (302) 556-2288.

Tell us about your practice

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About the author: Awais Afzal

Healthcare Operations & Data Analyst, RCM Finder

Awais has spent more than 16 years in healthcare digital marketing and clinical operations management. He builds data-driven revenue cycle blueprints for high-ticket medical practices and leads product development of the RCM Finder portal. More about our team.

How we write: every figure, code and rule on this page was checked against the primary source listed below and independently fact-checked before publishing. We re-review this page every six months. Last reviewed October 12, 2026; next review April 12, 2027.

Sources

  1. Evaluation and Management Services (MLN006764) — CMS (2026 (May 2026))
  2. Medicare Claims Processing Manual, Chapter 12, section 30.5 — CMS (current manual)
  3. Change Request 13843 / Transmittal 12987: NCD 210.15 PrEP — CMS (2024 (December 5, 2024))
  4. NCD 210.15 PrEP for HIV prevention guidance (MM13843) — CMS (2024)
  5. Billing JW and JZ modifiers (R12067CP) — CMS (2023 (June 2, 2023))
  6. Medicare Part B Drug Average Sales Price — CMS (2026 (modified August 28, 2026))
  7. Home Infusion Therapy Services — CMS (2026 (modified April 16, 2026))
  8. CY 2026 National Home Infusion Therapy Services Rates — CMS (2026)
  9. External Infusion Pumps LCD L33794 — CMS Medicare Coverage Database (2026 (revision effective July 1, 2026))
  10. External Infusion Pumps final LCD and response to comments article — Noridian JA DME (2025 (December 11, 2025))
  11. 42 CFR 486.520 Plan of care — eCFR (current)
  12. The urgent need for Medicare reimbursement for home infusion anti-infectives — Open Forum Infectious Diseases (Mansour et al.) (2020)
  13. New OPAT guidelines emphasize role of ID specialist — Healio (2018)
  14. Long-acting antiretroviral treatment: considerations for health care providers — HIVMA (2022 (June 2022))
  15. OA-ADAP Clinically Administered Medications — California Department of Public Health (2021 listing)
  16. Prevention of HIV infection: PrEP clinician summary — USPSTF (2023 (August 22, 2023))
  17. Kennedy v. Braidwood: The Supreme Court upheld ACA preventive services — KFF (2025 (June 27, 2025))
  18. Medicare Advantage insurers made nearly 53 million prior authorization determinations in 2024 — KFF (2026 (January 28, 2026))
  19. CMS Interoperability and Prior Authorization final rule (CMS-0057-F) fact sheet — CMS (2024)
  20. E/M descriptors and guidelines (2023) — AMA (2023)
  21. Core Elements of Outpatient Antibiotic Stewardship — CDC (2026 (updated August 3, 2026))
  22. 42 CFR 482.42 Infection prevention and control and antibiotic stewardship programs — eCFR (current)
  23. How to obtain a CLIA certificate of waiver — CMS (current)
  24. CPT 96365 code page — AAPC (current)
  25. CPT 96372 code page — AAPC (current)
  26. CPT 96374 code page — AAPC (current)
  27. Business associates guidance — HHS (current)
  28. Use of online tracking technologies by HIPAA covered entities — HHS (current)
  29. Minimum necessary requirement — HHS (current)